ibllib.io.extractors.biased_trials
Functions
Same as training_trials.extract_all except... |
Classes
Same as training_trials.TrainingTrials except... |
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Get left and right contrasts from raw datafile. |
Same as BiasedTrials except... |
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Bpod pre-generated values for probabilityLeft, contrastLR, phase, quiescence |
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Extracts the following into a table from Bpod raw data: |
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Extracts the following into a table from Bpod raw data: |
- extract_all(session_path, save=False, bpod_trials=False, settings=False, extra_classes=None, task_collection='raw_behavior_data', save_path=None)[source]
- Same as training_trials.extract_all except…
there is no RepNum
ContrastLR is extracted differently
IncludedTrials is only extracted for 5.0.0 or greater
- Parameters:
session_path –
save –
bpod_trials –
settings –
extra_classes – additional BaseBpodTrialsExtractor subclasses for custom extractions
- Returns:
- class BiasedTrials(session_path=None)[source]
Bases:
BaseBpodTrialsExtractor
- Same as training_trials.TrainingTrials except…
there is no RepNum
ContrastLR is extracted differently
IncludedTrials is only extracted for 5.0.0 or greater
- save_names = ('_ibl_trials.goCueTrigger_times.npy', '_ibl_trials.stimOnTrigger_times.npy', None, None, None, None, '_ibl_trials.table.pqt', None, None, '_ibl_wheel.timestamps.npy', '_ibl_wheel.position.npy', '_ibl_wheelMoves.intervals.npy', '_ibl_wheelMoves.peakAmplitude.npy', None, None, '_ibl_trials.included.npy', None, None, '_ibl_trials.quiescencePeriod.npy')
- var_names = ('goCueTrigger_times', 'stimOnTrigger_times', 'itiIn_times', 'stimOffTrigger_times', 'stimFreezeTrigger_times', 'errorCueTrigger_times', 'table', 'stimOff_times', 'stimFreeze_times', 'wheel_timestamps', 'wheel_position', 'wheelMoves_intervals', 'wheelMoves_peakAmplitude', 'peakVelocity_times', 'is_final_movement', 'included', 'phase', 'position', 'quiescence')
- class EphysTrials(session_path=None)[source]
Bases:
BaseBpodTrialsExtractor
- Same as BiasedTrials except…
Contrast, phase, position, probabilityLeft and quiescence is extracted differently
- save_names = ('_ibl_trials.goCueTrigger_times.npy', '_ibl_trials.stimOnTrigger_times.npy', None, None, None, None, '_ibl_trials.table.pqt', None, None, '_ibl_wheel.timestamps.npy', '_ibl_wheel.position.npy', '_ibl_wheelMoves.intervals.npy', '_ibl_wheelMoves.peakAmplitude.npy', None, None, '_ibl_trials.included.npy', None, None, '_ibl_trials.quiescencePeriod.npy')
- var_names = ('goCueTrigger_times', 'stimOnTrigger_times', 'itiIn_times', 'stimOffTrigger_times', 'stimFreezeTrigger_times', 'errorCueTrigger_times', 'table', 'stimOff_times', 'stimFreeze_times', 'wheel_timestamps', 'wheel_position', 'wheelMoves_intervals', 'wheelMoves_peakAmplitude', 'peakVelocity_times', 'is_final_movement', 'included', 'phase', 'position', 'quiescence')