ibllib.io.extractors.biased_trials
Classes
Same as training_trials.TrainingTrials except... |
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Get left and right contrasts from raw datafile. |
Same as BiasedTrials except... |
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Bpod pre-generated values for probabilityLeft, contrastLR, phase, quiescence. |
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Extracts the following into a table from Bpod raw data: |
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Extracts the following into a table from Bpod raw data: |
- class BiasedTrials(session_path=None)[source]
Bases:
BaseBpodTrialsExtractor
- Same as training_trials.TrainingTrials except…
there is no RepNum
ContrastLR is extracted differently
IncludedTrials is only extracted for 5.0.0 or greater
- save_names = ('_ibl_trials.goCueTrigger_times.npy', '_ibl_trials.stimOnTrigger_times.npy', None, '_ibl_trials.stimOffTrigger_times.npy', None, None, '_ibl_trials.table.pqt', '_ibl_trials.stimOff_times.npy', None, '_ibl_wheel.timestamps.npy', '_ibl_wheel.position.npy', '_ibl_wheelMoves.intervals.npy', '_ibl_wheelMoves.peakAmplitude.npy', None, None, '_ibl_trials.included.npy', None, None, '_ibl_trials.quiescencePeriod.npy')
The filenames of each extracted dataset, or None if array should not be saved.
- Type:
tuple of str
- var_names = ('goCueTrigger_times', 'stimOnTrigger_times', 'itiIn_times', 'stimOffTrigger_times', 'stimFreezeTrigger_times', 'errorCueTrigger_times', 'table', 'stimOff_times', 'stimFreeze_times', 'wheel_timestamps', 'wheel_position', 'wheelMoves_intervals', 'wheelMoves_peakAmplitude', 'peakVelocity_times', 'is_final_movement', 'included', 'phase', 'position', 'quiescence')
A list of names for the extracted variables. These become the returned output keys.
- Type:
tuple of str
- class EphysTrials(session_path=None)[source]
Bases:
BaseBpodTrialsExtractor
- Same as BiasedTrials except…
Contrast, phase, position, probabilityLeft and quiescence is extracted differently
- save_names = ('_ibl_trials.goCueTrigger_times.npy', '_ibl_trials.stimOnTrigger_times.npy', None, '_ibl_trials.stimOffTrigger_times.npy', None, None, '_ibl_trials.table.pqt', '_ibl_trials.stimOff_times.npy', None, '_ibl_wheel.timestamps.npy', '_ibl_wheel.position.npy', '_ibl_wheelMoves.intervals.npy', '_ibl_wheelMoves.peakAmplitude.npy', None, None, '_ibl_trials.included.npy', None, None, '_ibl_trials.quiescencePeriod.npy')
The filenames of each extracted dataset, or None if array should not be saved.
- Type:
tuple of str
- var_names = ('goCueTrigger_times', 'stimOnTrigger_times', 'itiIn_times', 'stimOffTrigger_times', 'stimFreezeTrigger_times', 'errorCueTrigger_times', 'table', 'stimOff_times', 'stimFreeze_times', 'wheel_timestamps', 'wheel_position', 'wheelMoves_intervals', 'wheelMoves_peakAmplitude', 'peakVelocity_times', 'is_final_movement', 'included', 'phase', 'position', 'quiescence')
A list of names for the extracted variables. These become the returned output keys.
- Type:
tuple of str