Atlas Examples

We present a set of hands-on examples to illustrate how to manipulate and visualize hierarchical brain atlas ontologies. The full package documentation can be found here

Anatomical Atlases

Below is a list of examples using the ibllib.atlas module

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. 181(4):936-953.e20. doi: 10.1016/j.cell.2020.04.007.

Gene expression

Ng, L., Bernard, A., Lau, C. et al. An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci 12, 356–362 (2009).

Lein, E.S. et al. (2007). Genome-wide atlas of gene expression in the adult mouse brain, Nature 445: 168-176. https://doi:10.1038/nature05453