ibllib.ephys.np2_converter

Classes

Class used to 1.

class NP2Converter(ap_file, post_check=True, delete_original=False, compress=True)[source]

Bases: object

Class used to 1. Extract LFP data from NP2 data and 2. If NP2.4 split the data into individual shanks

init_params(nsamples=None, nwindow=None, extra=None, nshank=None)[source]

Initiliases parameters for processing.

Parameters

nsamples – the number of samples to process
nwindow – the number of samples in each window when iterating through nsamples
extra – extra string to add the individual shank folder names
nshank – number of shanks to process, must be a list [0], you would only want to

override this for testing purposes :return:

check_metadata()[source]: Checks the keys in meta data to see if we are trying to process an ap file that has already been split into shanks. If we are sets flag and prevents further processing occurring :return:

process(overwrite=False)[source]

Function to call to process NP2 data

check_NP24()[source]

Check that the splitting into shanks process has completed correctly. Compares the original file to the reconstructed file from the individual shanks

compress_NP24(overwrite=False, **kwargs)[source]: Compress spikeglx files :return:

delete_NP24()[source]

Delete the original ap file that doesn’t has all shanks in one file

extract_lfp(chunk)[source]

Extracts LFP signal from full band signal, first applies low pass to anti-alias and LP, then downsamples

extract_lfp_sync(chunk_sync)[source]

Extracts downsampled signal of imec sync trace