iblrig.tools.call_bonsai

iblrig.tools.call_bonsai(workflow_file, parameters=None, start=True, debug=False, bootstrap=True, editor=True, wait=True, check=False, bonsai_executable=PosixPath('/home/runner/work/iblrig/iblrig/Bonsai/Bonsai.exe'))

Execute a Bonsai workflow within a subprocess call.

Parameters:

• workflow_file (str | Path) – Path to the Bonsai workflow file.

• parameters (dict[str, str], optional) – Parameters to be passed to Bonsai workflow.

• start (bool, optional) – Start execution of the workflow within Bonsai (default is True).

• debug (bool, optional) – Enable debugging mode if True (default is False). Only applies if editor is True.

• bootstrap (bool, optional) – Enable Bonsai bootstrapping if True (default is True).

• editor (bool, optional) – Enable Bonsai editor if True (default is True).

• wait (bool, optional) – Wait for Bonsai process to finish (default is True).

• check (bool, optional) – Raise CalledProcessError if Bonsai process exits with non-zero exit code (default is False). Only applies if wait is True.

• bonsai_executable (Path) – Path to bonsai executable. Defaults to iblrig.constants.BONSAI_EXE.

Returns:

Pointer to the Bonsai subprocess if wait is False, otherwise subprocess.CompletedProcess.

Return type:

Popen[bytes] | Popen[str | bytes | Any] | CompletedProcess

Raises:

FileNotFoundError – If the Bonsai executable does not exist. If the specified workflow file does not exist.

Parameters:

• workflow_file (str | Path)

• parameters (dict[str, Any] | None)

• start (bool)

• debug (bool)

• bootstrap (bool)

• editor (bool)

• wait (bool)

• check (bool)

• bonsai_executable (Path)