iblrig.ephys.neuropixel24_micromanipulator_coordinates

iblrig.ephys.neuropixel24_micromanipulator_coordinates(ref_shank, pname, ba=None, shank_spacings_um=(0, 200, 400, 600))

Provide the micro-manipulator coordinates of the first shank.

This function returns the relative coordinates of all shanks, labeled as probe01a, probe01b, etc.

Parameters:

ref_shank – dictionary with keys x, y, z, phi, theta, depth, roll

example: {‘x’: 2594.2, ‘y’: -3123.7, ‘z’: -711, ‘phi’: 0 + 15, ‘theta’: 15, ‘depth’: 1250.4, ‘roll’: 0} :param pname: str :param ba: brain atlas object :param shank_spacings_um: list of shank spacings in micrometers :return: